CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3361
Accession number FJ694791
Name CC 0030
SubtypeCRF02_AG
CountryGuinea-Bissau
Sampling year 2004

FJ694791 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggwctcggct tgctga-gtgc acacascaag aggcg-ggagc ggcgactggt gagtacgcca aw--ttttgact agcggaggct agaaggagag a

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012