CESSHIV-1 database

General information on HIV-1 isolate

# 1852

Accession number	FJ771006
Name	02BR082
Subtype	F1
Country	Brazil
Sampling year	2002

FJ771006 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcgactgg tgagtacgcc aaa--ttttgac tagcagaggc tagaaggaga ga

Isolates with identical sequences of region:

DQ189088(#2213) HM026456(#3295) HM026457(#3329) HM026460(#3347)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy