CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2770
Accession number FM877779
Name 02CD_LBTB032
Subtype26C
CountryDRC
Sampling year 2002
PatientLBTB032

FM877779 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctga-gtgc acacggcaag aggcgagaag cggcgactgg tgagtacgcc aaattttttg actagcggag gctagaagga gaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy