CESSHIV-1 database

General information on HIV-1 isolate

# 3204

Accession number	GQ324958
Name	U14842
Subtype	Group N
Country	Cameroon
Sampling year	2006
Patient	U14842

GQ324958 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct cgttg--gtgca cacagcgaga ggcgaggcgg cgg-aagtg-tg agtacgca----at tttgactggc ggtggccaga aagtaggaga ga

Isolates with identical sequences of region:

AJ006022(#226) AJ271370(#402) DQ017383(#668) FB675251(#3478) FB675252(#3479) GQ324959(#3203)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy