CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3289
Accession number GQ365650
Name 05_BR_NSP24
SubtypeBC
CountryBrazil
Sampling year 2005

GQ365650 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgttgaagtg cactcgacaa gaggcgagag -cggcggctgg tgagtacgcc attttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy