CESSHIV-1 database

General information on HIV-1 isolate

# 3560

Accession number	GQ387147
Name	98PTHEM103.17.2346
Subtype	CRF14_BG
Country	Portugal
Sampling year	1998
Patient	THEM103

GQ387147 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaggt gcccgcacag caagaggcaa gag-cggcggc tggtgagtac cccataaatt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

GQ387142(#3555) GQ387145(#3558) GQ387148(#3561)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy