CESSHIV-1 database

General information on HIV-1 isolate

# 3562

Accession number	GQ387149
Name	98PTHEM104.10.2290
Subtype	CRF14_BG
Country	Portugal
Sampling year	1996
Patient	THEM104

GQ387149 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaggt gcgcgcacag caagaggcga gag-cggcggc tggtgagtac gccataaatt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

GQ387151(#3564) GQ387156(#3568) GQ387157(#3569)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy