CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3411
Accession number GQ429847
Name clone_31
SubtypeA1
CountryKenya
Sampling year 1995
Patient1(35465)

GQ429847 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcga gaggcgagag -cggcgactgg tgagtacgcc aat--ttttgac tagcagaggc tagaaggaga ga

Isolates with identical sequences of region:

GQ429817(#3248)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy