CESSHIV-1 database

General information on HIV-1 isolate

# 3368

Accession number	GQ999978
Name	CAP84_3w_F2
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP84

GQ999978 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aattttattt gactagcggg ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy