CESSHIV-1 database

General information on HIV-1 isolate

# 3380

Accession number	GQ999990
Name	CAP257_7w_F1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP257

GQ999990 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaaattttat ttgactagcg gaggctagga ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy