CESSHIV-1 database

General information on HIV-1 isolate

# 5

Accession number	M17451
Name	RF, HAT-3
Subtype	B
Country	USA (Haiti)
Sampling year	1983
Patient	RF

M17451 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcggcaa gaggcgaggg gcggcgaacg gtgagtacgc cgaaaatttt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy