CESSHIV-1 database

General information on HIV-1 isolate

# 260

Accession number	U69590
Name	WCIPR clone 12
Subtype	B
Country	USA
Sampling year	1990
Patient	WC1-001

U69590 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcggctg gtgagtaccc caaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy