CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 72
Accession number U71182
Name RL42
SubtypeB'
CountryChina
Submitted to NCBI 1996
PatientRL42

U71182 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgagag -cggcgactgg tgagtacgcc a----atttgacta gcggaggcta gaaggagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy