CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2588
Accession number U86777
Name ZAM184_5_4
SubtypeA2C
CountryZambia
Sampling year 1990
PatientZAM-index

U86777 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc taaaattttt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

U86776(#2587)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy