CESSHIV-1 database

General information on HIV-1 isolate

# 1056

Accession number	AB052600
Name	98TNIH045
Subtype	CRF01_AE
Country	Thailand
Sampling year	1998

AB052600 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttga agcctcaata aagcttgcct tgagtgctta aagtggtgtg tgcccatctg tgttaggact ctggtaacta gagatccctc agaccactct agactgagta -aaaatctcta gca

Isolates with identical sequences of region:

AB253427(#910) AB485655(#2664) EF036535(#857)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy