CESSHIV-1 database

General information on HIV-1 isolate

# 1945

Accession number	AF239623
Name	PAIR8_MOTHER
Subtype	D
Country	Tanzania
Sampling year	1996
Patient	8-mother

AF239623 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcctatctgt tgtg--actctg gtaactagag atccctcaga cctctttagt cagtgtggaa aatctctagc a

Isolates with identical sequences of region:

AY932678(#2148) AY932710(#2180)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy