CESSHIV-1 database

General information on HIV-1 isolate

# 1953

Accession number	AF239631
Name	PAIR2_MOTHER
Subtype	A
Country	Tanzania
Sampling year	1996
Patient	2-mother

AF239631 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgactca agcagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gactgtgta-a aaatctctag ca

Isolates with identical sequences of region:

AF096655(#1936) AF239658(#1980)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy