CESSHIV-1 database

General information on HIV-1 isolate

# 1472

Accession number	AF254682
Name	NT11_1
Subtype	D
Country	Tanzania
Sampling year	1996
Patient	11

AF254682 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtg--actctg gtaactagag atccctcaga cctctttagt cagtgtggaa aatctctagc a

Isolates with identical sequences of region:

AF096637(#1918) AF196738(#1305) AF254689(#1478)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy