CESSHIV-1 database

General information on HIV-1 isolate

# 1519

Accession number	AF254732
Name	B46_1
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	46

AF254732 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccccttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

L28883(#2451) L28895(#2463) L28896(#2464) L28898(#2466) L28900(#2468) L28902(#2470) L28903(#2471) L28912(#2480) L28917(#2485)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy