CESSHIV-1 database

General information on HIV-1 isolate

# 90

Accession number	AF290028
Name	C.96BW06.J4
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW06

AF290028 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctata agtagtgtgt gcccatctgt tatatggagt ctggtaacta gagatccctc aggccctttt ggt-agtgagg aaaatctcta gca

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy