CESSHIV-1 database

General information on HIV-1 isolate

# 1984

Accession number	AF405201
Name	98ZM104M
Subtype	C
Country	Zambia
Sampling year	1998
Patient	104M

AF405201 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccattttg gt-agtgtgga aaatctctag ca

Isolates with identical sequences of region:

AB191647(#1173) AF405198(#1981) AM076853(#1554) AM076854(#1555) AM076855(#1556) EU293446(#1206) U51292(#2512)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy