CESSHIV-1 database

General information on HIV-1 isolate

# 3185

Accession number	AY047309
Name	TV006
Subtype	C
Country	South Africa
Sampling year	1998
Patient	TV006

AY047309 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccttttt ggtagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AF254711(#1499) AF411967(#238) AY047300(#3156) U51294(#2514)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy