CESSHIV-1 database

General information on HIV-1 isolate

# 2041

Accession number	AY610981
Name	03SP100609
Subtype	CRF02_AG
Country	Spain (Cameroon)
Sampling year	2003

AY610981 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg gtgtttgact ctggtaacta gagatccctc agactaaaag ctagactgtg taaaaatctc tagca

Isolates with identical sequences of region:

EF380385(#2264) EF380388(#2266) EF380391(#2268)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy