CESSHIV-1 database

General information on HIV-1 isolate

# 669

Accession number	DQ400856
Name	04RU001
Subtype	CRF06_cpx
Country	Russia
Sampling year	2005
Patient	04RU001

DQ400856 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttaa agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaacacttta gacagtgta-a aaatctctag ca

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy