CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1865
Accession number EU047666
Name 07KYY4_3347
SubtypeB Korean
CountrySouth Korea
Sampling year 2007
PatientKYY(KR4)

EU047666 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacactttta gttagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

EU047664(#1873)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy