CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1866
Accession number EU047667
Name 07KYY4_3603
SubtypeB Korean
CountrySouth Korea
Sampling year 2007
PatientKYY(KR4)

EU047667 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccatctgt tgtgtgactc tggtaactag agatccctca gacactttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

EU047662(#1863) EU047663(#1864)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy