CESSHIV-1 database

General information on HIV-1 isolate

# 1007

Accession number	EU220698
Name	04CA7750
Subtype	A1C
Country	Canada (Rwanda)
Sampling year	2004
Patient	7750

EU220698 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtttgactc tggtaactag agatccctca gaccactcta gactgtgta-a aaatctctag ca

Isolates with identical sequences of region:

AB480047(#2711) AB480048(#2712)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy