CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3465
Accession number EU807771
Name Progressor_10
SubtypeB
CountryUSA
Submitted to NCBI 2008
PatientP

EU807771 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccaaatta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

EU807770(#3464) EU807772(#3466) EU807773(#3467) EU807774(#3468)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy