CESSHIV-1 database

General information on HIV-1 isolate

# 3469

Accession number	FJ554570
Name	CRIGT50
Subtype	C
Country	India
Submitted to NCBI	2008

FJ554570 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccctttgt ggtagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

AB191680(#1370) AB485646(#2726) AB485647(#2727) AF110964(#130) AF239638(#1960) AF239639(#1961) AM076847(#1547) AM076889(#1591) AM076890(#1592) AY047301(#3172) AY932726(#2034) EU293447(#1207)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy