CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2510
Accession number FJ614886
Name 08MHR1_4562s
SubtypeCRF02_AG
CountrySouth Korea
Sampling year 2008
PatientMHR

FJ614886 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccaatcta gacttggta-a aaatctctag ca

Isolates with identical sequences of region:

FJ614887(#1911)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy