CESSHIV-1 database

General information on HIV-1 isolate

# 2357

Accession number	FJ614940
Name	00MHI4_4058
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2000
Patient	MHI

FJ614940 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gcttgggta-a aaatctctag ca

Isolates with identical sequences of region:

FJ614926(#2343) FJ614931(#2348) FJ614951(#2370)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy