CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3432
Accession number GQ222257
Name c2008_32384
SubtypeB
CountryGermany
Sampling year 2008

GQ222257 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttatatt gtagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc agacctttat agtcagtgtg gaaaatctct agca

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy