CESSHIV-1 database

General information on HIV-1 isolate

# 3150

Accession number	GU237072
Name	04CMU11421
Subtype	J
Country	Cameroon
Sampling year	2004

GU237072 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacc-ttttag tcagtgtgga aaatctctag ca

Isolates with identical sequences of region:

AY610978(#2038) GU177863(#3290) GU647198(#3318)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy