CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2416
Accession number L28848
Name 1B16
SubtypeB
CountryUSA
Submitted to NCBI 1994
Patient1

L28848 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctg gagtgcttca agcagtgtgt scccgtttgt tgtgtgacty tggtagctag agatccctta gaccctttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

L28847(#2415) L28849(#2417) L28850(#2418)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy