CESSHIV-1 database

General information on HIV-1 isolate

# 2502

Accession number	U51282
Name	92br025
Subtype	C
Country	Brazil
Sampling year	1992
Patient	BR025

U51282 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctctg agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacacctttt gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

GQ365649(#3288) HM100716(#3316)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy