CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 262
Accession number U69592
Name WCIPR clone 31
SubtypeB
CountryUSA
Sampling year 1990
PatientWC1-001

U69592 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccatttta gtcagtgagg aaaatctcta gca

Isolates with identical sequences of region:

U69589(#259)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy