CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1107
Accession number A34828
Name NDK
SubtypeD
Country
Submitted to NCBI 1990
PatientNDK
CommentsPatent

A34828 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagatccgt ttagtccgag tgaaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta gaaccagaga agatctctcg acgcaggac

Isolates with identical sequences of region:

M27323(#4)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy