CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3429
Accession number AF049494
Name 499JC16
SubtypeB
CountryUSA
Submitted to NCBI 1998
PatientC499
CommentsExperimental

AF049494 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaaatc tctagcagtg gcgcccgaac agggaccgga aagcaaaagg gaaaccagag aagctctctc gacgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

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