CESSHIV-1 database

General information on HIV-1 isolate

# 1971

Accession number	AF239649
Name	PAIR5_INFANT
Subtype	A
Country	Tanzania
Sampling year	1996
Patient	5-baby

AF239649 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagaaggtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtt---c cagagaagtt ctctcgacgc aggac

Isolates with identical sequences of region:

AF239630(#1952) U51283(#2503)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy