General information on HIV-1 isolate
# 86
Accession number |
AF259955 |
Name | pCM235-4 |
Subtype | CRF01_AE |
Country | Thailand |
Sampling year |
1990 |
Patient | CM235 |
AF259955 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .
The region encompassing PBS domainThe primary sequence:
tgtgttggga ctctggtaac tagagatccc tcagaccact ctagactgag t--aaaatctct agcagtggcg cccgaacagg gacttgaaag cgaaagttaa tagggactcg aaagcgaaag tt---ccagagaa gttctctcga cgcaggac
Isolates with identical sequences of region:
AF259954(#85)
The optimal secondary structure:
![](img_pbs.php?fold_id=248&fold_num=1&bottom_text=dG+%3D+-48.17++kcal%2Fmol)
The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy
![](img_pbs.php?fold_id=248&fold_num=2&bottom_text=ddG+%3D+%2B1.6+kcal%2Fmol)
![](img_pbs.php?fold_id=248&fold_num=3&bottom_text=ddG+%3D+%2B2.1+kcal%2Fmol)
![](img_pbs.php?fold_id=248&fold_num=5&bottom_text=ddG+%3D+%2B3.2+kcal%2Fmol)