CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1402
Accession number AF286242
Name 94CY017
SubtypeA2
CountryCyprus
Sampling year 1994
PatientCY017

AF286242 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtttga ctctggtaac tagagatccc tcagaccacg ctaggcggtg ta-aaaatctc tagcagtggc gcccgaacag ggacccgaaa agcgaaagta acagggactc gaaagcgaaa gtt---ccagagg agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012