CESSHIV-1 database

General information on HIV-1 isolate

# 1986

Accession number	AF405203
Name	97ZM057M
Subtype	C
Country	Zambia
Sampling year	1997
Patient	057M

AF405203 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AM076887(#1589) AM076889(#1591) AM076890(#1592) AY228556(#311) AY878054(#512) AY901979(#442) AY932726(#2034) DQ011170(#460) DQ056407(#477) DQ396379(#701)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy