CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1120
Accession number AF450098
Name X138
SubtypeG
CountrySpain
Sampling year 1999
PatientX138

AF450098 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

--ttgtgtgact ctggtaacta gagatccctc agaccactct agatagtgta -aaaatctcta gcagtggcgc ccgaacaggg acttgaaagc gaaagttmac aggsactcga aagcgaaagt t---ccagagaag ttctctcgac gcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012