CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1574
Accession number AM076872
Name PG227_24
SubtypeC
CountryMozambique
Sampling year 2003
PatientPG227

AM076872 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttatgtga ctctggtaac tagagatccc tcagacactt gtagtcagtg tggaaaatct ctagcagtgg cgcccgaaca ggtacttgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AM076875(#1577)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy