CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 358
Accession number AY314053
Name WC10P-11
SubtypeB
CountryCanada
Sampling year 1996
PatientWC10

AY314053 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagactctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagag aaaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AY314044(#349) AY314045(#350) AY314047(#352) AY314049(#354) AY314050(#355) AY314051(#356) AY314056(#361) AY314059(#364) AY314063(#368)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy