CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 367
Accession number AY314062
Name WC10C-11
SubtypeB
CountryCanada
Sampling year 1996
PatientWC10

AY314062 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagactctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagag aaaccagaga agatctctcg acgcaggac

Isolates with identical sequences of region:

AY314054(#359) AY314055(#360) AY314057(#362) AY314058(#363) AY314060(#365)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy