CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 379
Accession number AY322191
Name ML672-3-1997
SubtypeAC
CountryKenya
Sampling year 1997
PatientML672

AY322191 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagacggtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa atagggactt gaaagcgaaa gtt---ccagaga agttctcttg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012