CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 401
Accession number AY455785
Name 94UFRJ-58
SubtypeBF
CountryBrazil
Sampling year 1994
PatientBR58

AY455785 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatc ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa -gcgaaagtag aaccagagaa gatctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012