CESSHIV-1 database

General information on HIV-1 isolate

# 326

Accession number	AY463228
Name	C.ZA.J38MA
Subtype	C
Country	South Africa
Sampling year	2000
Patient	J38Ma

AY463228 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttgga-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy