CESSHIV-1 database

General information on HIV-1 isolate

# 331

Accession number	AY463233
Name	C.ZA.1178MB
Subtype	C
Country	South Africa
Sampling year	2000
Patient	1178M

AY463233 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccctt gttggtagtg ---aaaatctcta gcagtggcgc ccgaacaggg acgcgaaagt gaaagtaaga ccagaggaga tctctcgacg caggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy